题名 | A pyroptosis-related gene signature provides an alternative for predicting the prognosis of patients with hepatocellular carcinoma |
作者 | |
发表日期 | 2023-01-07 |
发表期刊 | BMC medical genomics 影响因子和分区 |
语种 | 英语 |
原始文献类型 | Journal Article ; Research Support, Non-U.S. Gov't |
关键词 | Drug sensitivity Gene signature Hepatocellular carcinoma (HCC) Immune status Overall survival Pyroptosis |
其他关键词 | TUMOR PROGRESSION ; CANCER-CELLS ; SIGNALING PATHWAYS ; GASDERMIN D ; ANGIOGENESIS ; METASTASIS ; TARGETS ; DEATH ; MICROENVIRONMENT ; MACROPHAGES |
摘要 | Hepatocellular Carcinoma (HCC) is a common malignant neoplasm with limited treatment options and poor outcomes. Thus, there is an urgent need to find sensitive biomarkers for HCC., Gene expression and clinicopathological information were obtained from public databases, based on which a pyroptosis-related gene signature was constructed by the least absolute shrinkage and selection operator Cox regression. The applicability of the signature was evaluated via Kaplan-Meier curve and time-dependent ROC curve. TIMER, QUANTISEQ, MCPCOUNTER, EPIC, CIBERSORT, ssGSEA, and ESTIMATE were employed to assess the immune status. Comparisons between groups were analyzed with Wilcoxon test. Pearson and Spearman correlation analyses were adopted for linear correlation analysis. Genetic knockdown was conducted using siRNA transfection and the mRNA expression levels of interest genes were measured using quantitative reverse transcription PCR. Finally, protein levels in 10 paired tumor tissues and adjacent non-tumor tissues from HCC patients were measured using immunohistochemistry., A pyroptosis-related gene signature was established successfully to calculate independent prognostic risk scores. It was found that survival outcomes varied significantly between different risk groups. In addition, an attenuated antitumor immune response was found in the high-risk group. Meanwhile, multiple immune checkpoints were up-regulated in high-risk score patients. Cell cycle-related genes, angiogenesis-related genes and tumor drug resistance genes were also markedly elevated. Knockdown of prognostic genes in the signature significantly inhibited the expression of immune checkpoint genes and angiogenesis-related genes. Besides, each prognostic gene was expressed at a higher level in HCC tissues than in adjacent normal tissues., We successfully established a novel pyroptosis-related gene signature which could help predict the overall survival and assess the immune status of HCC patients. |
出版者 | BMC |
ISSN | 1755-8794 |
EISSN | 1755-8794 |
卷号 | 16期号:1 |
DOI | 10.1186/s12920-023-01431-z |
页数 | 12 |
WOS类目 | Genetics & Heredity |
WOS研究方向 | Genetics & Heredity |
WOS记录号 | WOS:000932314200001 |
收录类别 | SCIE ; PUBMED ; SCOPUS |
URL | 查看原文 |
PubMed ID | 36611208 |
SCOPUSEID | 2-s2.0-85145848194 |
通讯作者地址 | [Song, Xian]Department of Gastroenterology,The First Affiliated Hospital of Wenzhou Medical University,Nanbaixiang, Ouhai District, Zhejiang,Wenzhou,China ; [Zhu, Xiaohong]Department of Anesthesiology,The First Affiliated Hospital of Wenzhou Medical University,Nanbaixiang, Ouhai District, Zhejiang,Wenzhou,China |
Scopus学科分类 | Genetics;Genetics (clinical) |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | https://kms.wmu.edu.cn/handle/3ETUA0LF/172706 |
专题 | 附属第一医院 附属第一医院_麻醉科 第一临床医学院(信息与工程学院)、附属第一医院_麻醉科 |
通讯作者 | Song, Xian; Zhu, Xiaohong |
作者单位 | 1.Department of Surgical Oncology,Wenzhou Hospital of Traditional Chinese Medicine Affiliated to Zhejiang Chinese Medicine University,Zhejiang,Wenzhou,China; 2.Department of Gastroenterology,The First Affiliated Hospital of Wenzhou Medical University,Nanbaixiang, Ouhai District, Zhejiang,Wenzhou,China; 3.Department of Anesthesiology,The First Affiliated Hospital of Wenzhou Medical University,Nanbaixiang, Ouhai District, Zhejiang,Wenzhou,China |
通讯作者单位 | 附属第一医院; 第一临床医学院(信息与工程学院)、附属第一医院_麻醉科; 附属第一医院_麻醉科 |
推荐引用方式 GB/T 7714 | Lin, Dezhao,Chen, Zhuoyan,Zeng, Yuan,et al. A pyroptosis-related gene signature provides an alternative for predicting the prognosis of patients with hepatocellular carcinoma[J]. BMC medical genomics,2023,16(1). |
APA | Lin, Dezhao., Chen, Zhuoyan., Zeng, Yuan., Ding, Yinrong., Zhao, Luying., ... & Zhu, Xiaohong. (2023). A pyroptosis-related gene signature provides an alternative for predicting the prognosis of patients with hepatocellular carcinoma. BMC medical genomics, 16(1). |
MLA | Lin, Dezhao,et al."A pyroptosis-related gene signature provides an alternative for predicting the prognosis of patients with hepatocellular carcinoma".BMC medical genomics 16.1(2023). |
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